J5_8BN3_014

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

8BN3|1|2|U|639, 8BN3|1|2|U|694, 8BN3|1|2|C|696, 8BN3|1|2|C|697, 8BN3|1|2|U|813, 8BN3|1|2|G|815, 8BN3|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BN3|1|2|A|636
8BN3|1|2|C|637
8BN3|1|2|U|638
8BN3|1|2|U|639
8BN3|1|2|U|640
8BN3|1|2|G|641
*
8BN3|1|2|U|693
8BN3|1|2|U|694
8BN3|1|2|U|695
8BN3|1|2|C|696
8BN3|1|2|C|697
8BN3|1|2|U|698
*
8BN3|1|2|A|740
8BN3|1|2|C|741
8BN3|1|2|U|742
8BN3|1|2|U|743
8BN3|1|2|U|744
*
8BN3|1|2|A|807
8BN3|1|2|U|808
8BN3|1|2|A|809
8BN3|1|2|G|810
8BN3|1|2|A|811
8BN3|1|2|A|812
8BN3|1|2|U|813
8BN3|1|2|A|814
8BN3|1|2|G|815
8BN3|1|2|G|816
8BN3|1|2|A|817
*
8BN3|1|2|U|854
8BN3|1|2|A|855
8BN3|1|2|A|856
8BN3|1|2|U|857
8BN3|1|2|G|858
8BN3|1|2|A|859
8BN3|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

Small ribosomal subunit protein uS17A

Chain C3

40S ribosomal protein S13

Chain D2

RPS22A isoform 1

Chain M9

60S ribosomal protein L19-A

Chain S7

40S ribosomal protein S7-A