J5_8BPO_004
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8BPO|1|A1|G|3620, 8BPO|1|A1|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BPO_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1065
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BPO|1|A1|G|2855
8BPO|1|A1|C|2856
8BPO|1|A1|A|2857
8BPO|1|A1|A|2858
8BPO|1|A1|G|2859
8BPO|1|A1|C|2860
8BPO|1|A1|C|2861
8BPO|1|A1|G|2862
8BPO|1|A1|G|2863
*
8BPO|1|A1|U|2887
8BPO|1|A1|G|2888
*
8BPO|1|A1|U|3613
8BPO|1|A1|G|3614
*
8BPO|1|A1|C|3618
8BPO|1|A1|G|3619
8BPO|1|A1|G|3620
8BPO|1|A1|A|3621
8BPO|1|A1|C|3622
8BPO|1|A1|C|3623
8BPO|1|A1|A|3624
8BPO|1|A1|G|3625
8BPO|1|A1|G|3626
*
8BPO|1|A1|C|3835
8BPO|1|A1|A|3836
8BPO|1|A1|C|3837
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain B2
- Ribosomal protein L3
- Chain Q2
- 60S ribosomal protein L19
- Chain U2
- 60S ribosomal protein L23
- Chain V2
- Ribosomal protein L24
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