Loop J5_8BPO

3D structure

PDB id: 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

Loop

Sequence: AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length: 40 nucleotides
Bulged bases: 8BPO|1|A1|A|4394, 8BPO|1|A1|U|4555, 8BPO|1|A1|U|4556
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8BPO|1|A1|A|3903
8BPO|1|A1|G|3904
8BPO|1|A1|A|3905
8BPO|1|A1|A|3906
8BPO|1|A1|G|3907
8BPO|1|A1|A|3908
8BPO|1|A1|C|3909
8BPO|1|A1|C|3910
*
8BPO|1|A1|G|4392
8BPO|1|A1|G|4393
8BPO|1|A1|A|4394
8BPO|1|A1|U|4395
8BPO|1|A1|A|4396
8BPO|1|A1|A|4397
8BPO|1|A1|C|4398
8BPO|1|A1|U|4399
8BPO|1|A1|G|4400
*
8BPO|1|A1|C|4444
8BPO|1|A1|U|4445
8BPO|1|A1|U|4446
8BPO|1|A1|C|4447
8BPO|1|A1|G|4448
8BPO|1|A1|A|4449
8BPO|1|A1|U|4450
8BPO|1|A1|G|4451
8BPO|1|A1|U|4452
8BPO|1|A1|C|4453
*
8BPO|1|A1|G|4528
8BPO|1|A1|G|4529
8BPO|1|A1|U|4530
8BPO|1|A1|U|4531
8BPO|1|A1|U|4532
8BPO|1|A1|A|4533
8BPO|1|A1|G|4534
*
8BPO|1|A1|U|4552
8BPO|1|A1|A|4553
8BPO|1|A1|G|4554
8BPO|1|A1|U|4555
8BPO|1|A1|U|4556
8BPO|1|A1|U|4557

Current chains

Chain A1: 28S ribosomal RNA

Nearby chains

Chain A2: 60S ribosomal protein L8
Chain B2: Ribosomal protein L3
Chain C2: 60S ribosomal protein L4
Chain Z2: 60S ribosomal protein L27a
Chain a2: 60S ribosomal protein L29

J5_8BPO_005