J5_8BRM_001

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGACGAAG*CGAACG*CG*CGC*GGG

Length

22 nucleotides

Bulged bases

8BRM|1|LD|C|39

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|LD|C|36
8BRM|1|LD|G|37
8BRM|1|LD|A|38
8BRM|1|LD|C|39
8BRM|1|LD|G|40
8BRM|1|LD|A|41
8BRM|1|LD|A|42
8BRM|1|LD|G|43
*
8BRM|1|LD|C|102
8BRM|1|LD|G|103
8BRM|1|LD|A|104
8BRM|1|LD|A|105
8BRM|1|LD|C|106
8BRM|1|LD|G|107
*
8BRM|1|LD|C|113
8BRM|1|LD|G|114
*
8BRM|1|LD|C|121
8BRM|1|LD|G|122
8BRM|1|LD|C|123
*
8BRM|1|Lt|G|19
8BRM|1|Lt|G|20
8BRM|1|Lt|G|21

Current chains

Chain LD

5.8S rRNA

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LO

Ribosomal protein L15

Chain LY

Ribosomal protein L23A

Chain Li

Ribosomal protein L29

Chain Lk

Ribosomal protein L37