J5_8BRM_005

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

8BRM|1|Lt|A|2240, 8BRM|1|Lt|U|2376, 8BRM|1|Lt|U|2400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|Lt|A|1887
8BRM|1|Lt|G|1888
8BRM|1|Lt|A|1889
8BRM|1|Lt|A|1890
8BRM|1|Lt|G|1891
8BRM|1|Lt|A|1892
8BRM|1|Lt|C|1893
8BRM|1|Lt|C|1894
*
8BRM|1|Lt|G|2238
8BRM|1|Lt|G|2239
8BRM|1|Lt|A|2240
8BRM|1|Lt|U|2241
8BRM|1|Lt|A|2242
8BRM|1|Lt|A|2243
8BRM|1|Lt|C|2244
8BRM|1|Lt|U|2245
8BRM|1|Lt|G|2246
*
8BRM|1|Lt|C|2290
8BRM|1|Lt|U|2291
8BRM|1|Lt|U|2292
8BRM|1|Lt|C|2293
8BRM|1|Lt|G|2294
8BRM|1|Lt|A|2295
8BRM|1|Lt|U|2296
8BRM|1|Lt|G|2297
8BRM|1|Lt|U|2298
8BRM|1|Lt|C|2299
*
8BRM|1|Lt|G|2373
8BRM|1|Lt|G|2374
8BRM|1|Lt|U|2375
8BRM|1|Lt|U|2376
8BRM|1|Lt|U|2377
8BRM|1|Lt|A|2378
8BRM|1|Lt|G|2379
*
8BRM|1|Lt|U|2397
8BRM|1|Lt|A|2398
8BRM|1|Lt|G|2399
8BRM|1|Lt|U|2400
8BRM|1|Lt|U|2401
8BRM|1|Lt|U|2402

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain LB

Ribosomal protein L3

Chain LC

Ribosomal protein L4

Chain LQ

Ribosomal protein L17

Chain Lb

Ribosomal protein L27a