J5_8BRM_007

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUCU*AGCGC*GAGCGAG*CGCGCAG*CGAG

Length

27 nucleotides

Bulged bases

8BRM|1|St|C|422

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|St|C|30
8BRM|1|St|U|31
8BRM|1|St|C|32
8BRM|1|St|U|33
*
8BRM|1|St|A|387
8BRM|1|St|G|388
8BRM|1|St|C|389
8BRM|1|St|G|390
8BRM|1|St|C|391
*
8BRM|1|St|G|394
8BRM|1|St|A|395
8BRM|1|St|G|396
8BRM|1|St|C|397
8BRM|1|St|G|398
8BRM|1|St|A|399
8BRM|1|St|G|400
*
8BRM|1|St|C|420
8BRM|1|St|G|421
8BRM|1|St|C|422
8BRM|1|St|G|423
8BRM|1|St|C|424
8BRM|1|St|A|425
8BRM|1|St|G|426
*
8BRM|1|St|C|472
8BRM|1|St|G|473
8BRM|1|St|A|474
8BRM|1|St|G|475

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SK

Ribosomal protein S9

Chain SO

Ribosomal protein S23

Chain Sb

Ribosomal protein S24

Chain Sj

Ribosomal protein S30