J5_8BTK_002

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUG(PSU)*AAAUAAC*GGAAUGAG*CGAGG(A2M)UCCAU*AUA(OMG)

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|A2|C|30
8BTK|1|A2|U|31
8BTK|1|A2|U|32
8BTK|1|A2|G|33
8BTK|1|A2|PSU|34
*
8BTK|1|A2|A|522
8BTK|1|A2|A|523
8BTK|1|A2|A|524
8BTK|1|A2|U|525
8BTK|1|A2|A|526
8BTK|1|A2|A|527
8BTK|1|A2|C|528
*
8BTK|1|A2|G|559
8BTK|1|A2|G|560
8BTK|1|A2|A|561
8BTK|1|A2|A|562
8BTK|1|A2|U|563
8BTK|1|A2|G|564
8BTK|1|A2|A|565
8BTK|1|A2|G|566
*
8BTK|1|A2|C|586
8BTK|1|A2|G|587
8BTK|1|A2|A|588
8BTK|1|A2|G|589
8BTK|1|A2|G|590
8BTK|1|A2|A2M|591
8BTK|1|A2|U|592
8BTK|1|A2|C|593
8BTK|1|A2|C|594
8BTK|1|A2|A|595
8BTK|1|A2|U|596
*
8BTK|1|A2|A|642
8BTK|1|A2|U|643
8BTK|1|A2|A|644
8BTK|1|A2|OMG|645

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Aw

40S ribosomal protein S23