J5_8BTK_004

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

8BTK|1|A2|G|126, 8BTK|1|A2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|A2|G|123
8BTK|1|A2|U|124
8BTK|1|A2|C|125
8BTK|1|A2|G|126
8BTK|1|A2|C|127
8BTK|1|A2|U|128
8BTK|1|A2|C|129
*
8BTK|1|A2|G|183
8BTK|1|A2|G|184
8BTK|1|A2|G|185
*
8BTK|1|A2|U|214
8BTK|1|A2|G|215
*
8BTK|1|A2|C|311
8BTK|1|A2|C|312
8BTK|1|A2|G|313
*
8BTK|1|A2|C|338
8BTK|1|A2|G|339
8BTK|1|A2|A|340
8BTK|1|A2|C|341
8BTK|1|A2|C|342

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8