J5_8BTK_006
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)
- Length
- 24 nucleotides
- Bulged bases
- 8BTK|1|B5|C|2132, 8BTK|1|B5|U|2193
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BTK_006 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0704
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8BTK|1|B5|G|1279
8BTK|1|B5|G|1280
8BTK|1|B5|A|1281
8BTK|1|B5|G|1282
8BTK|1|B5|U|1283
8BTK|1|B5|OMC|1284
*
8BTK|1|B5|G|1471
8BTK|1|B5|G|1472
8BTK|1|B5|A|1473
8BTK|1|B5|C|1474
*
8BTK|1|B5|G|1613
8BTK|1|B5|U|1614
8BTK|1|B5|U|1615
8BTK|1|B5|C|1616
*
8BTK|1|B5|G|2131
8BTK|1|B5|C|2132
8BTK|1|B5|C|2133
*
8BTK|1|B5|G|2188
8BTK|1|B5|C|2189
8BTK|1|B5|A|2190
8BTK|1|B5|G|2191
8BTK|1|B5|A|2192
8BTK|1|B5|U|2193
8BTK|1|B5|OMC|2194
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BC
- 60S ribosomal protein L4
- Chain BL
- L13
- Chain BN
- Ribosomal protein L15
- Chain Ba
- 60S ribosomal protein L27a
- Chain Be
- eL32
- Chain Br
- 60S ribosomal protein L28
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