J5_8BTK_007
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8BTK|1|B5|G|3352, 8BTK|1|B5|G|3357
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BTK_007 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1115
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BTK|1|B5|G|2698
8BTK|1|B5|C|2699
8BTK|1|B5|A|2700
8BTK|1|B5|A|2701
8BTK|1|B5|G|2702
8BTK|1|B5|C|2703
8BTK|1|B5|OMC|2704
8BTK|1|B5|G|2705
8BTK|1|B5|G|2706
*
8BTK|1|B5|U|2730
8BTK|1|B5|G|2731
*
8BTK|1|B5|U|3345
8BTK|1|B5|G|3346
*
8BTK|1|B5|C|3350
8BTK|1|B5|G|3351
8BTK|1|B5|G|3352
8BTK|1|B5|A|3353
8BTK|1|B5|C|3354
8BTK|1|B5|C|3355
8BTK|1|B5|A|3356
8BTK|1|B5|G|3357
8BTK|1|B5|G|3358
*
8BTK|1|B5|C|3567
8BTK|1|B5|A|3568
8BTK|1|B5|C|3569
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain BB
- Ribosomal protein L3
- Chain BR
- 60S ribosomal protein L19
- Chain BV
- Ribosomal protein L23
- Chain BW
- Ribosomal protein L24
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