Loop J5_8BTK

3D structure

PDB id: 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the TRAP complex with the Sec translocon and a translating ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

Loop

Sequence: AGAAGACCC*G(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
Length: 42 nucleotides
Bulged bases: 8BTK|1|B5|A|3640, 8BTK|1|B5|A|4140, 8BTK|1|B5|U|4301
QA status: Modified nucleotides: OMG, 5MC, UR3, PSU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8BTK|1|B5|A|3635
8BTK|1|B5|G|3636
8BTK|1|B5|A|3637
8BTK|1|B5|A|3638
8BTK|1|B5|G|3639
8BTK|1|B5|A|3640
8BTK|1|B5|C|3641
8BTK|1|B5|C|3642
8BTK|1|B5|C|3643
*
8BTK|1|B5|G|4137
8BTK|1|B5|OMG|4138
8BTK|1|B5|G|4139
8BTK|1|B5|A|4140
8BTK|1|B5|U|4141
8BTK|1|B5|A|4142
8BTK|1|B5|A|4143
8BTK|1|B5|C|4144
8BTK|1|B5|U|4145
8BTK|1|B5|G|4146
*
8BTK|1|B5|C|4190
8BTK|1|B5|U|4191
8BTK|1|B5|U|4192
8BTK|1|B5|5MC|4193
8BTK|1|B5|G|4194
8BTK|1|B5|A|4195
8BTK|1|B5|U|4196
8BTK|1|B5|G|4197
8BTK|1|B5|U|4198
8BTK|1|B5|C|4199
*
8BTK|1|B5|G|4274
8BTK|1|B5|G|4275
8BTK|1|B5|UR3|4276
8BTK|1|B5|U|4277
8BTK|1|B5|PSU|4278
8BTK|1|B5|A|4279
8BTK|1|B5|G|4280
*
8BTK|1|B5|PSU|4298
8BTK|1|B5|A|4299
8BTK|1|B5|G|4300
8BTK|1|B5|U|4301
8BTK|1|B5|U|4302
8BTK|1|B5|U|4303

Current chains

Chain B5: 28S rRNA

Nearby chains

Chain AT: Transfer RNA; tRNA
Chain BA: 60S ribosomal protein L8
Chain BB: Ribosomal protein L3
Chain BC: 60S ribosomal protein L4
Chain BI: Ribosomal protein L10
Chain BK: Nascent chain
Chain Ba: 60S ribosomal protein L27a
Chain Bb: 60S ribosomal protein L29

J5_8BTK_008