J5_8BUU_002

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCCG*CAAG

Length

33 nucleotides

Bulged bases

8BUU|1|A|U|301, 8BUU|1|A|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BUU|1|A|C|271
8BUU|1|A|C|272
8BUU|1|A|A|273
8BUU|1|A|A|274
8BUU|1|A|A|275
8BUU|1|A|C|276
*
8BUU|1|A|G|295
8BUU|1|A|G|296
8BUU|1|A|G|297
8BUU|1|A|U|298
8BUU|1|A|U|299
8BUU|1|A|G|300
8BUU|1|A|U|301
8BUU|1|A|A|302
*
8BUU|1|A|U|416
8BUU|1|A|G|417
8BUU|1|A|A|418
8BUU|1|A|G|419
8BUU|1|A|U|420
8BUU|1|A|A|421
8BUU|1|A|C|422
*
8BUU|1|A|G|446
8BUU|1|A|G|447
8BUU|1|A|A|448
8BUU|1|A|A|449
8BUU|1|A|U|450
8BUU|1|A|C|451
8BUU|1|A|C|452
8BUU|1|A|G|453
*
8BUU|1|A|C|468
8BUU|1|A|A|469
8BUU|1|A|A|470
8BUU|1|A|G|471

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L28