J5_8BUU_008

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGG*CGUG*CUGUUG*CCAGAAAG*CAAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BUU|1|a|C|38
8BUU|1|a|U|39
8BUU|1|a|G|40
8BUU|1|a|G|41
*
8BUU|1|a|C|411
8BUU|1|a|G|412
8BUU|1|a|U|413
8BUU|1|a|G|414
*
8BUU|1|a|C|444
8BUU|1|a|U|445
8BUU|1|a|G|446
8BUU|1|a|U|447
8BUU|1|a|U|448
8BUU|1|a|G|449
*
8BUU|1|a|C|502
8BUU|1|a|C|503
8BUU|1|a|A|504
8BUU|1|a|G|505
8BUU|1|a|A|506
8BUU|1|a|A|507
8BUU|1|a|A|508
8BUU|1|a|G|509
*
8BUU|1|a|C|554
8BUU|1|a|A|555
8BUU|1|a|A|556
8BUU|1|a|G|557

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain l

30S ribosomal protein S12