J5_8BUU_009
3D structure
- PDB id
- 8BUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ARE-ABCF VmlR2 bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8BUU|1|a|A|107, 8BUU|1|a|C|360
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BUU_009 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.0875
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8BUU|1|a|C|60
8BUU|1|a|A|61
8BUU|1|a|A|62
8BUU|1|a|G|63
*
8BUU|1|a|C|104
8BUU|1|a|G|105
8BUU|1|a|G|106
8BUU|1|a|A|107
8BUU|1|a|C|108
8BUU|1|a|G|109
8BUU|1|a|G|110
8BUU|1|a|G|111
*
8BUU|1|a|C|322
8BUU|1|a|A|323
8BUU|1|a|C|324
*
8BUU|1|a|G|345
8BUU|1|a|A|346
8BUU|1|a|C|347
*
8BUU|1|a|G|358
8BUU|1|a|G|359
8BUU|1|a|C|360
8BUU|1|a|A|361
8BUU|1|a|G|362
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
- Chain p
- 30S ribosomal protein S16
- Chain t
- 30S ribosomal protein S20
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