J5_8C01_002

3D structure

PDB id

8C01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP_A population of yeast small ribosomal subunit precursors

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C01|1|2|C|31
8C01|1|2|U|32
8C01|1|2|U|33
8C01|1|2|G|34
8C01|1|2|U|35
*
8C01|1|2|A|473
8C01|1|2|A|474
8C01|1|2|A|475
8C01|1|2|U|476
8C01|1|2|A|477
8C01|1|2|A|478
8C01|1|2|C|479
*
8C01|1|2|G|509
8C01|1|2|G|510
8C01|1|2|A|511
8C01|1|2|A|512
8C01|1|2|U|513
8C01|1|2|G|514
8C01|1|2|A|515
8C01|1|2|G|516
*
8C01|1|2|C|536
8C01|1|2|G|537
8C01|1|2|A|538
8C01|1|2|G|539
8C01|1|2|G|540
8C01|1|2|A|541
8C01|1|2|A|542
8C01|1|2|C|543
8C01|1|2|A|544
8C01|1|2|A|545
8C01|1|2|U|546
*
8C01|1|2|A|592
8C01|1|2|U|593
8C01|1|2|A|594
8C01|1|2|G|595

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A

Chain t

Ribosome biogenesis protein TSR1