J5_8C83_003

3D structure

PDB id

8C83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

8C83|1|2|U|639, 8C83|1|2|U|694, 8C83|1|2|C|696, 8C83|1|2|C|697, 8C83|1|2|U|813, 8C83|1|2|G|815, 8C83|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C83|1|2|A|636
8C83|1|2|C|637
8C83|1|2|U|638
8C83|1|2|U|639
8C83|1|2|U|640
8C83|1|2|G|641
*
8C83|1|2|U|693
8C83|1|2|U|694
8C83|1|2|U|695
8C83|1|2|C|696
8C83|1|2|C|697
8C83|1|2|U|698
*
8C83|1|2|A|740
8C83|1|2|C|741
8C83|1|2|U|742
8C83|1|2|U|743
8C83|1|2|U|744
*
8C83|1|2|A|807
8C83|1|2|U|808
8C83|1|2|A|809
8C83|1|2|G|810
8C83|1|2|A|811
8C83|1|2|A|812
8C83|1|2|U|813
8C83|1|2|A|814
8C83|1|2|G|815
8C83|1|2|G|816
8C83|1|2|A|817
*
8C83|1|2|U|854
8C83|1|2|A|855
8C83|1|2|A|856
8C83|1|2|U|857
8C83|1|2|G|858
8C83|1|2|A|859
8C83|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain U

40S ribosomal protein S7-A

Chain X

40S ribosomal protein S11-A

Chain Y

40S ribosomal protein S13

Chain b

40S ribosomal protein S22-A

Chain x

OTU domain-containing protein 2