J5_8C8X_001

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAUCA*UGAGG

Length

26 nucleotides

Bulged bases

8C8X|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C8X|1|A|C|47
8C8X|1|A|G|48
8C8X|1|A|A|49
8C8X|1|A|U|50
8C8X|1|A|G|51
8C8X|1|A|A|52
8C8X|1|A|A|53
8C8X|1|A|G|54
*
8C8X|1|A|C|116
8C8X|1|A|G|117
8C8X|1|A|A|118
8C8X|1|A|A|119
8C8X|1|A|U|120
8C8X|1|A|G|121
*
8C8X|1|A|C|130
8C8X|1|A|A|131
*
8C8X|1|A|U|148
8C8X|1|A|A|149
8C8X|1|A|U|150
8C8X|1|A|C|151
8C8X|1|A|A|152
*
8C8X|1|A|U|174
8C8X|1|A|G|175
8C8X|1|A|A|176
8C8X|1|A|G|177
8C8X|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain X

50S ribosomal protein L28