J5_8C8Y_005

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UUUAC*GUUUG*CU*AG*CGGAUAAAA

Length

23 nucleotides

Bulged bases

8C8Y|1|A|U|2076, 8C8Y|1|A|A|2077, 8C8Y|1|A|U|2243, 8C8Y|1|A|U|2245, 8C8Y|1|A|A|2430, 8C8Y|1|A|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C8Y|1|A|U|2074
8C8Y|1|A|U|2075
8C8Y|1|A|U|2076
8C8Y|1|A|A|2077
8C8Y|1|A|C|2078
*
8C8Y|1|A|G|2242
8C8Y|1|A|U|2243
8C8Y|1|A|U|2244
8C8Y|1|A|U|2245
8C8Y|1|A|G|2246
*
8C8Y|1|A|C|2258
8C8Y|1|A|U|2259
*
8C8Y|1|A|A|2281
8C8Y|1|A|G|2282
*
8C8Y|1|A|C|2427
8C8Y|1|A|G|2428
8C8Y|1|A|G|2429
8C8Y|1|A|A|2430
8C8Y|1|A|U|2431
8C8Y|1|A|A|2432
8C8Y|1|A|A|2433
8C8Y|1|A|A|2434
8C8Y|1|A|A|2435

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L27

Chain X

50S ribosomal protein L28