J5_8C8Z_005
3D structure
- PDB id
- 8C8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM captures early ribosome assembly in action
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.12 Å
Loop
- Sequence
- GCACGAAG*UUGAC*GGU*AGGUCAUAGUGAUCC*GCUCAAC
- Length
- 38 nucleotides
- Bulged bases
- 8C8Z|1|A|G|2286, 8C8Z|1|A|A|2288, 8C8Z|1|A|U|2390, 8C8Z|1|A|C|2422, 8C8Z|1|A|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8C8Z|1|A|G|2282
8C8Z|1|A|C|2283
8C8Z|1|A|A|2284
8C8Z|1|A|C|2285
8C8Z|1|A|G|2286
8C8Z|1|A|A|2287
8C8Z|1|A|A|2288
8C8Z|1|A|G|2289
*
8C8Z|1|A|U|2343
8C8Z|1|A|U|2344
8C8Z|1|A|G|2345
8C8Z|1|A|A|2346
8C8Z|1|A|C|2347
*
8C8Z|1|A|G|2370
8C8Z|1|A|G|2371
8C8Z|1|A|U|2372
*
8C8Z|1|A|A|2381
8C8Z|1|A|G|2382
8C8Z|1|A|G|2383
8C8Z|1|A|U|2384
8C8Z|1|A|C|2385
8C8Z|1|A|A|2386
8C8Z|1|A|U|2387
8C8Z|1|A|A|2388
8C8Z|1|A|G|2389
8C8Z|1|A|U|2390
8C8Z|1|A|G|2391
8C8Z|1|A|A|2392
8C8Z|1|A|U|2393
8C8Z|1|A|C|2394
8C8Z|1|A|C|2395
*
8C8Z|1|A|G|2421
8C8Z|1|A|C|2422
8C8Z|1|A|U|2423
8C8Z|1|A|C|2424
8C8Z|1|A|A|2425
8C8Z|1|A|A|2426
8C8Z|1|A|C|2427
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
Coloring options: