J5_8C99_003

3D structure

PDB id

8C99 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8C99|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8C99_003 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1451

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8C99|1|A|C|47
8C99|1|A|G|48
8C99|1|A|A|49
8C99|1|A|U|50
8C99|1|A|G|51
8C99|1|A|A|52
8C99|1|A|A|53
8C99|1|A|G|54
*
8C99|1|A|C|116
8C99|1|A|G|117
8C99|1|A|A|118
8C99|1|A|A|119
8C99|1|A|U|120
8C99|1|A|G|121
*
8C99|1|A|C|130
8C99|1|A|A|131
*
8C99|1|A|U|148
8C99|1|A|A|149
8C99|1|A|U|150
*
8C99|1|A|A|176
8C99|1|A|G|177
8C99|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34