J5_8CAH_002

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

8CAH|1|2|G|540, 8CAH|1|2|A|541, 8CAH|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CAH|1|2|C|31
8CAH|1|2|U|32
8CAH|1|2|U|33
8CAH|1|2|G|34
8CAH|1|2|U|35
*
8CAH|1|2|A|473
8CAH|1|2|A|474
8CAH|1|2|A|475
8CAH|1|2|U|476
8CAH|1|2|A|477
8CAH|1|2|A|478
8CAH|1|2|C|479
*
8CAH|1|2|G|509
8CAH|1|2|G|510
8CAH|1|2|A|511
8CAH|1|2|A|512
8CAH|1|2|U|513
8CAH|1|2|G|514
8CAH|1|2|A|515
8CAH|1|2|G|516
*
8CAH|1|2|C|536
8CAH|1|2|G|537
8CAH|1|2|A|538
8CAH|1|2|G|539
8CAH|1|2|G|540
8CAH|1|2|A|541
8CAH|1|2|A|542
8CAH|1|2|C|543
8CAH|1|2|A|544
8CAH|1|2|A|545
8CAH|1|2|U|546
*
8CAH|1|2|A|592
8CAH|1|2|U|593
8CAH|1|2|A|594
8CAH|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A

Chain p

Eukaryotic translation initiation factor 3 subunit B

Chain z

Eukaryotic translation initiation factor 3 subunit J