J5_8CAH_004
3D structure
- PDB id
- 8CAH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- ACUUUG*UUUCCUUC*GGACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 39 nucleotides
- Bulged bases
- 8CAH|1|2|U|639, 8CAH|1|2|U|694, 8CAH|1|2|C|696, 8CAH|1|2|C|697, 8CAH|1|2|U|698, 8CAH|1|2|U|813, 8CAH|1|2|G|815, 8CAH|1|2|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CAH|1|2|A|636
8CAH|1|2|C|637
8CAH|1|2|U|638
8CAH|1|2|U|639
8CAH|1|2|U|640
8CAH|1|2|G|641
*
8CAH|1|2|U|693
8CAH|1|2|U|694
8CAH|1|2|U|695
8CAH|1|2|C|696
8CAH|1|2|C|697
8CAH|1|2|U|698
8CAH|1|2|U|699
8CAH|1|2|C|700
*
8CAH|1|2|G|738
8CAH|1|2|G|739
8CAH|1|2|A|740
8CAH|1|2|C|741
8CAH|1|2|U|742
8CAH|1|2|U|743
8CAH|1|2|U|744
*
8CAH|1|2|A|807
8CAH|1|2|U|808
8CAH|1|2|A|809
8CAH|1|2|G|810
8CAH|1|2|A|811
8CAH|1|2|A|812
8CAH|1|2|U|813
8CAH|1|2|A|814
8CAH|1|2|G|815
8CAH|1|2|G|816
8CAH|1|2|A|817
*
8CAH|1|2|U|854
8CAH|1|2|A|855
8CAH|1|2|A|856
8CAH|1|2|U|857
8CAH|1|2|G|858
8CAH|1|2|A|859
8CAH|1|2|U|860
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- OTU domain-containing protein 2
- Chain S
- 40S ribosomal protein S4-B
- Chain U
- 40S ribosomal protein S7-A
- Chain X
- 40S ribosomal protein S11-A
- Chain Y
- 40S ribosomal protein S13
- Chain b
- 40S ribosomal protein S22-A
Coloring options: