J5_8CAS_002

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

8CAS|1|2|A|541, 8CAS|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CAS|1|2|C|31
8CAS|1|2|U|32
8CAS|1|2|U|33
8CAS|1|2|G|34
8CAS|1|2|U|35
*
8CAS|1|2|A|473
8CAS|1|2|A|474
8CAS|1|2|A|475
8CAS|1|2|U|476
8CAS|1|2|A|477
8CAS|1|2|A|478
8CAS|1|2|C|479
*
8CAS|1|2|G|509
8CAS|1|2|G|510
8CAS|1|2|A|511
8CAS|1|2|A|512
8CAS|1|2|U|513
8CAS|1|2|G|514
8CAS|1|2|A|515
8CAS|1|2|G|516
*
8CAS|1|2|C|536
8CAS|1|2|G|537
8CAS|1|2|A|538
8CAS|1|2|G|539
8CAS|1|2|G|540
8CAS|1|2|A|541
8CAS|1|2|A|542
8CAS|1|2|C|543
8CAS|1|2|A|544
8CAS|1|2|A|545
8CAS|1|2|U|546
*
8CAS|1|2|A|592
8CAS|1|2|U|593
8CAS|1|2|A|594
8CAS|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A

Chain p

Eukaryotic translation initiation factor 3 subunit B