J5_8CAS_004

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU

Length

37 nucleotides

Bulged bases

8CAS|1|2|U|639, 8CAS|1|2|U|694, 8CAS|1|2|C|696, 8CAS|1|2|C|697, 8CAS|1|2|U|813, 8CAS|1|2|G|815, 8CAS|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CAS|1|2|A|636
8CAS|1|2|C|637
8CAS|1|2|U|638
8CAS|1|2|U|639
8CAS|1|2|U|640
8CAS|1|2|G|641
*
8CAS|1|2|U|693
8CAS|1|2|U|694
8CAS|1|2|U|695
8CAS|1|2|C|696
8CAS|1|2|C|697
8CAS|1|2|U|698
8CAS|1|2|U|699
*
8CAS|1|2|G|739
8CAS|1|2|A|740
8CAS|1|2|C|741
8CAS|1|2|U|742
8CAS|1|2|U|743
8CAS|1|2|U|744
*
8CAS|1|2|A|807
8CAS|1|2|U|808
8CAS|1|2|A|809
8CAS|1|2|G|810
8CAS|1|2|A|811
8CAS|1|2|A|812
8CAS|1|2|U|813
8CAS|1|2|A|814
8CAS|1|2|G|815
8CAS|1|2|G|816
8CAS|1|2|A|817
*
8CAS|1|2|U|854
8CAS|1|2|A|855
8CAS|1|2|A|856
8CAS|1|2|U|857
8CAS|1|2|G|858
8CAS|1|2|A|859
8CAS|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain U

40S ribosomal protein S7-A

Chain X

40S ribosomal protein S11-A

Chain Y

40S ribosomal protein S13

Chain b

40S ribosomal protein S22-A

Chain x

OTU domain-containing protein 2