J5_8CBJ_003

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU

Length

37 nucleotides

Bulged bases

8CBJ|1|2|U|638, 8CBJ|1|2|U|694, 8CBJ|1|2|C|696, 8CBJ|1|2|U|742, 8CBJ|1|2|U|813, 8CBJ|1|2|G|815, 8CBJ|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CBJ|1|2|A|636
8CBJ|1|2|C|637
8CBJ|1|2|U|638
8CBJ|1|2|U|639
8CBJ|1|2|U|640
8CBJ|1|2|G|641
*
8CBJ|1|2|U|693
8CBJ|1|2|U|694
8CBJ|1|2|U|695
8CBJ|1|2|C|696
8CBJ|1|2|C|697
8CBJ|1|2|U|698
8CBJ|1|2|U|699
*
8CBJ|1|2|G|739
8CBJ|1|2|A|740
8CBJ|1|2|C|741
8CBJ|1|2|U|742
8CBJ|1|2|U|743
8CBJ|1|2|U|744
*
8CBJ|1|2|A|807
8CBJ|1|2|U|808
8CBJ|1|2|A|809
8CBJ|1|2|G|810
8CBJ|1|2|A|811
8CBJ|1|2|A|812
8CBJ|1|2|U|813
8CBJ|1|2|A|814
8CBJ|1|2|G|815
8CBJ|1|2|G|816
8CBJ|1|2|A|817
*
8CBJ|1|2|U|854
8CBJ|1|2|A|855
8CBJ|1|2|A|856
8CBJ|1|2|U|857
8CBJ|1|2|G|858
8CBJ|1|2|A|859
8CBJ|1|2|U|860

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S7-A

Chain K

OTU domain-containing protein 2

Chain L

40S ribosomal protein S11-A

Chain N

40S ribosomal protein S13

Chain W

40S ribosomal protein S22-A