J5_8CCS_008

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGG(A2M)ACAAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CCS|1|c|C|31
8CCS|1|c|U|32
8CCS|1|c|U|33
8CCS|1|c|G|34
8CCS|1|c|U|35
*
8CCS|1|c|A|473
8CCS|1|c|A|474
8CCS|1|c|A|475
8CCS|1|c|U|476
8CCS|1|c|A|477
8CCS|1|c|A|478
8CCS|1|c|C|479
*
8CCS|1|c|G|509
8CCS|1|c|G|510
8CCS|1|c|A|511
8CCS|1|c|A|512
8CCS|1|c|U|513
8CCS|1|c|G|514
8CCS|1|c|A|515
8CCS|1|c|G|516
*
8CCS|1|c|C|536
8CCS|1|c|G|537
8CCS|1|c|A|538
8CCS|1|c|G|539
8CCS|1|c|G|540
8CCS|1|c|A2M|541
8CCS|1|c|A|542
8CCS|1|c|C|543
8CCS|1|c|A|544
8CCS|1|c|A|545
8CCS|1|c|U|546
*
8CCS|1|c|A|592
8CCS|1|c|U|593
8CCS|1|c|A|594
8CCS|1|c|G|595

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S30-A

Chain m

40S ribosomal protein S9-A

Chain z

40S ribosomal protein S23-A