J5_8CDR_004
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8CDR|1|AA|G|2116, 8CDR|1|AA|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8CDR_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.056
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CDR|1|AA|G|1906
8CDR|1|AA|C|1907
8CDR|1|AA|A|1908
8CDR|1|AA|A|1909
8CDR|1|AA|A|1910
8CDR|1|AA|A|1911
8CDR|1|AA|U|1912
8CDR|1|AA|A|1913
8CDR|1|AA|G|1914
*
8CDR|1|AA|U|1938
8CDR|1|AA|G|1939
*
8CDR|1|AA|U|2109
8CDR|1|AA|G|2110
*
8CDR|1|AA|C|2114
8CDR|1|AA|G|2115
8CDR|1|AA|G|2116
8CDR|1|AA|A|2117
8CDR|1|AA|C|2118
8CDR|1|AA|A|2119
8CDR|1|AA|A|2120
8CDR|1|AA|G|2121
8CDR|1|AA|G|2122
*
8CDR|1|AA|C|2331
8CDR|1|AA|A|2332
8CDR|1|AA|C|2333
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L19-A
- Chain FF
- 60S ribosomal protein L3
- Chain H
- 60S ribosomal protein L23-A
- Chain I
- 60S ribosomal protein L24-A
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
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