J5_8CDU_001
3D structure
- PDB id
- 8CDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rnase R bound to a 30S degradation intermediate (main state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGG*CGUG*CUGUUG*CCAGAAAG*CAAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CDU|1|A|C|38
8CDU|1|A|U|39
8CDU|1|A|G|40
8CDU|1|A|G|41
*
8CDU|1|A|C|411
8CDU|1|A|G|412
8CDU|1|A|U|413
8CDU|1|A|G|414
*
8CDU|1|A|C|444
8CDU|1|A|U|445
8CDU|1|A|G|446
8CDU|1|A|U|447
8CDU|1|A|U|448
8CDU|1|A|G|449
*
8CDU|1|A|C|502
8CDU|1|A|C|503
8CDU|1|A|A|504
8CDU|1|A|G|505
8CDU|1|A|A|506
8CDU|1|A|A|507
8CDU|1|A|A|508
8CDU|1|A|G|509
*
8CDU|1|A|C|554
8CDU|1|A|A|555
8CDU|1|A|A|556
8CDU|1|A|G|557
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain F
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
Coloring options: