J5_8CDU_002
3D structure
- PDB id
- 8CDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rnase R bound to a 30S degradation intermediate (main state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8CDU|1|A|A|107, 8CDU|1|A|C|360
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8CDU_002 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.0908
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8CDU|1|A|C|60
8CDU|1|A|A|61
8CDU|1|A|A|62
8CDU|1|A|G|63
*
8CDU|1|A|C|104
8CDU|1|A|G|105
8CDU|1|A|G|106
8CDU|1|A|A|107
8CDU|1|A|C|108
8CDU|1|A|G|109
8CDU|1|A|G|110
8CDU|1|A|G|111
*
8CDU|1|A|C|322
8CDU|1|A|A|323
8CDU|1|A|C|324
*
8CDU|1|A|G|345
8CDU|1|A|A|346
8CDU|1|A|C|347
*
8CDU|1|A|G|358
8CDU|1|A|G|359
8CDU|1|A|C|360
8CDU|1|A|A|361
8CDU|1|A|G|362
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain P
- 30S ribosomal protein S16
- Chain S
- 30S ribosomal protein S20
Coloring options: