J5_8CGD_005
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 8CGD|1|a|A|2062, 8CGD|1|a|A|2448, 8CGD|1|a|H2U|2449, 8CGD|1|a|U|2585, 8CGD|1|a|U|2609
- QA status
- Modified nucleotides: H2U, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CGD|1|a|G|2057
8CGD|1|a|A|2058
8CGD|1|a|A|2059
8CGD|1|a|A|2060
8CGD|1|a|G|2061
8CGD|1|a|A|2062
8CGD|1|a|C|2063
8CGD|1|a|C|2064
*
8CGD|1|a|G|2446
8CGD|1|a|G|2447
8CGD|1|a|A|2448
8CGD|1|a|H2U|2449
8CGD|1|a|A|2450
8CGD|1|a|A|2451
8CGD|1|a|C|2452
8CGD|1|a|A|2453
*
8CGD|1|a|U|2500
8CGD|1|a|C|2501
8CGD|1|a|G|2502
8CGD|1|a|2MA|2503
8CGD|1|a|PSU|2504
8CGD|1|a|G|2505
8CGD|1|a|U|2506
8CGD|1|a|C|2507
*
8CGD|1|a|G|2582
8CGD|1|a|G|2583
8CGD|1|a|U|2584
8CGD|1|a|U|2585
8CGD|1|a|U|2586
8CGD|1|a|A|2587
8CGD|1|a|G|2588
*
8CGD|1|a|C|2606
8CGD|1|a|G|2607
8CGD|1|a|G|2608
8CGD|1|a|U|2609
8CGD|1|a|C|2610
8CGD|1|a|C|2611
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain c
- Large ribosomal subunit protein uL2
- Chain d
- Large ribosomal subunit protein uL3
- Chain e
- Large ribosomal subunit protein uL4
- Chain k
- 50S ribosomal protein L15
- Chain l
- Large ribosomal subunit protein uL16
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: