3D structure

PDB id
8CGJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Streptomycin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
1.79 Å

Loop

Sequence
CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
Length
28 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8CGJ_002 not in the Motif Atlas
Homologous match to J5_5J7L_002
Geometric discrepancy: 0.0526
The information below is about J5_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_67416.1
Basepair signature
cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
Number of instances in this motif group
1

Unit IDs

8CGJ|1|A|C|36
8CGJ|1|A|U|37
8CGJ|1|A|G|38
8CGJ|1|A|G|39
*
8CGJ|1|A|C|403
8CGJ|1|A|G|404
8CGJ|1|A|U|405
8CGJ|1|A|G|406
*
8CGJ|1|A|C|436
8CGJ|1|A|U|437
8CGJ|1|A|U|438
8CGJ|1|A|U|439
8CGJ|1|A|C|440
8CGJ|1|A|A|441
8CGJ|1|A|G|442
*
8CGJ|1|A|C|492
8CGJ|1|A|A|493
8CGJ|1|A|G|494
8CGJ|1|A|A|495
8CGJ|1|A|A|496
8CGJ|1|A|G|497
8CGJ|1|A|A|498
8CGJ|1|A|A|499
8CGJ|1|A|G|500
*
8CGJ|1|A|C|545
8CGJ|1|A|A|546
8CGJ|1|A|A|547
8CGJ|1|A|G|548

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
Small ribosomal subunit protein uS4
Chain L
Small ribosomal subunit protein uS12

Coloring options:


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