J5_8CGK_001

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8CGK|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8CGK_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0335

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8CGK|1|a|C|47
8CGK|1|a|G|48
8CGK|1|a|A|49
8CGK|1|a|U|50
8CGK|1|a|G|51
8CGK|1|a|A|52
8CGK|1|a|A|53
8CGK|1|a|G|54
*
8CGK|1|a|C|116
8CGK|1|a|G|117
8CGK|1|a|A|118
8CGK|1|a|A|119
8CGK|1|a|U|120
8CGK|1|a|G|121
*
8CGK|1|a|C|130
8CGK|1|a|A|131
*
8CGK|1|a|U|148
8CGK|1|a|A|149
8CGK|1|a|U|150
*
8CGK|1|a|A|176
8CGK|1|a|G|177
8CGK|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34