J5_8CGV_001

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8CGV|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8CGV_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0344

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8CGV|1|a|C|47
8CGV|1|a|G|48
8CGV|1|a|A|49
8CGV|1|a|U|50
8CGV|1|a|G|51
8CGV|1|a|A|52
8CGV|1|a|A|53
8CGV|1|a|G|54
*
8CGV|1|a|C|116
8CGV|1|a|G|117
8CGV|1|a|A|118
8CGV|1|a|A|119
8CGV|1|a|U|120
8CGV|1|a|G|121
*
8CGV|1|a|C|130
8CGV|1|a|A|131
*
8CGV|1|a|U|148
8CGV|1|a|A|149
8CGV|1|a|U|150
*
8CGV|1|a|A|176
8CGV|1|a|G|177
8CGV|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34