J5_8CRE_007
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8CRE|1|AU|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8CRE_007 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.0467
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CRE|1|AS|A|19
8CRE|1|AS|G|20
8CRE|1|AS|G|21
*
8CRE|1|AU|C|35
8CRE|1|AU|G|36
8CRE|1|AU|A|37
8CRE|1|AU|U|38
8CRE|1|AU|G|39
8CRE|1|AU|A|40
8CRE|1|AU|A|41
8CRE|1|AU|G|42
*
8CRE|1|AU|U|102
8CRE|1|AU|G|103
8CRE|1|AU|A|104
8CRE|1|AU|A|105
8CRE|1|AU|C|106
8CRE|1|AU|G|107
*
8CRE|1|AU|C|115
8CRE|1|AU|G|116
*
8CRE|1|AU|C|137
8CRE|1|AU|A|138
8CRE|1|AU|U|139
Current chains
- Chain AS
- 25S
- Chain AU
- 5.8S
Nearby chains
- Chain BI
- 60S ribosomal protein L15-A
- Chain BS
- 60S ribosomal protein L25
- Chain CC
- Ribosomal protein L29
- Chain CE
- 60S ribosomal protein L37-B
- Chain CG
- 60S ribosomal protein L39
Coloring options: