J5_8CRE_009
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGAAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 8CRE|1|AS|A|717, 8CRE|1|AS|A|780, 8CRE|1|AS|G|781
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8CRE_009 not in the Motif Atlas
- Homologous match to J5_8C3A_003
- Geometric discrepancy: 0.0467
- The information below is about J5_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CRE|1|AS|C|673
8CRE|1|AS|G|674
8CRE|1|AS|A|675
8CRE|1|AS|G|676
*
8CRE|1|AS|C|700
8CRE|1|AS|G|701
8CRE|1|AS|U|702
8CRE|1|AS|A|703
8CRE|1|AS|A|704
*
8CRE|1|AS|U|711
8CRE|1|AS|G|712
8CRE|1|AS|A|713
8CRE|1|AS|A|714
8CRE|1|AS|C|715
8CRE|1|AS|G|716
8CRE|1|AS|A|717
8CRE|1|AS|A|718
8CRE|1|AS|G|719
*
8CRE|1|AS|C|745
8CRE|1|AS|G|746
8CRE|1|AS|A|747
*
8CRE|1|AS|U|778
8CRE|1|AS|A|779
8CRE|1|AS|A|780
8CRE|1|AS|G|781
8CRE|1|AS|A|782
8CRE|1|AS|G|783
Current chains
- Chain AS
- 25S
Nearby chains
- Chain AY
- 60S ribosomal protein L4-B
- Chain BG
- 60S ribosomal protein L13
- Chain BL
- 60S ribosomal protein L18-A
- Chain BO
- 60S ribosomal protein L21-A
- Chain BV
- 60S ribosomal protein L28
- Chain BW
- 60S ribosomal protein L29
- Chain CD
- 60S ribosomal protein L36
Coloring options: