J5_8CRE_015
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUAGUACCUUACUACUU*AUGCUUAAAA*UG*CGA*UGGUU
- Length
- 37 nucleotides
- Bulged bases
- 8CRE|1|B|U|132, 8CRE|1|B|U|133, 8CRE|1|B|A|134, 8CRE|1|B|C|135, 8CRE|1|B|U|136, 8CRE|1|B|C|138, 8CRE|1|B|U|139, 8CRE|1|B|U|176
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CRE|1|B|A|124
8CRE|1|B|U|125
8CRE|1|B|A|126
8CRE|1|B|G|127
8CRE|1|B|U|128
8CRE|1|B|A|129
8CRE|1|B|C|130
8CRE|1|B|C|131
8CRE|1|B|U|132
8CRE|1|B|U|133
8CRE|1|B|A|134
8CRE|1|B|C|135
8CRE|1|B|U|136
8CRE|1|B|A|137
8CRE|1|B|C|138
8CRE|1|B|U|139
8CRE|1|B|U|140
*
8CRE|1|B|A|171
8CRE|1|B|U|172
8CRE|1|B|G|173
8CRE|1|B|C|174
8CRE|1|B|U|175
8CRE|1|B|U|176
8CRE|1|B|A|177
8CRE|1|B|A|178
8CRE|1|B|A|179
8CRE|1|B|A|180
*
8CRE|1|B|U|201
8CRE|1|B|G|202
*
8CRE|1|B|C|261
8CRE|1|B|G|262
8CRE|1|B|A|263
*
8CRE|1|B|U|287
8CRE|1|B|G|288
8CRE|1|B|G|289
8CRE|1|B|U|290
8CRE|1|B|U|291
Current chains
- Chain B
- 18S
Nearby chains
- Chain G
- 40S ribosomal protein S4
- Chain I
- 40S ribosomal protein S6
- Chain K
- 40S ribosomal protein S8
Coloring options: