J5_8CRE_018

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AAAG

Length

26 nucleotides

Bulged bases

8CRE|1|CM|A|542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_80702.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8CRE|1|CM|C|31
8CRE|1|CM|U|32
8CRE|1|CM|U|33
8CRE|1|CM|G|34
8CRE|1|CM|U|35
*
8CRE|1|CM|A|471
8CRE|1|CM|A|472
8CRE|1|CM|A|473
8CRE|1|CM|U|474
8CRE|1|CM|A|475
8CRE|1|CM|A|476
8CRE|1|CM|C|477
*
8CRE|1|CM|G|507
8CRE|1|CM|G|508
8CRE|1|CM|A|509
8CRE|1|CM|A|510
8CRE|1|CM|U|511
8CRE|1|CM|G|512
*
8CRE|1|CM|C|541
8CRE|1|CM|A|542
8CRE|1|CM|A|543
8CRE|1|CM|U|544
*
8CRE|1|CM|A|590
8CRE|1|CM|A|591
8CRE|1|CM|A|592
8CRE|1|CM|G|593

Current chains

Chain CM

18S

Nearby chains

Chain CW

Ribosomal protein S4

Chain DK

Ribosomal protein S23 (S12)

Chain DR

40S ribosomal protein S30