J5_8CVK_005

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

8CVK|1|1A|G|1758, 8CVK|1|1A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8CVK_005 not in the Motif Atlas

Homologous match to J5_9DFE_005

Geometric discrepancy: 0.0609

The information below is about J5_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8CVK|1|1A|G|1674
8CVK|1|1A|C|1675
8CVK|1|1A|A|1676
8CVK|1|1A|A|1677
8CVK|1|1A|G|1678
8CVK|1|1A|U|1679
8CVK|1|1A|U|1680
8CVK|1|1A|G|1681
8CVK|1|1A|G|1682
*
8CVK|1|1A|U|1706
8CVK|1|1A|G|1707
*
8CVK|1|1A|C|1751
8CVK|1|1A|C|1752
*
8CVK|1|1A|G|1756
8CVK|1|1A|U|1757
8CVK|1|1A|G|1758
8CVK|1|1A|A|1759
8CVK|1|1A|A|1760
8CVK|1|1A|C|1761
8CVK|1|1A|A|1762
8CVK|1|1A|G|1763
8CVK|1|1A|G|1764
*
8CVK|1|1A|C|1988
8CVK|1|1A|G|1989
8CVK|1|1A|C|1990

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1O

50S ribosomal protein L14

Chain 1T

50S ribosomal protein L19

Chain 1a

Small subunit ribosomal RNA; SSU rRNA