J5_8CVK_014

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

8CVK|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVK|1|2A|C|601
8CVK|1|2A|G|602
8CVK|1|2A|A|603
8CVK|1|2A|G|604
*
8CVK|1|2A|C|624
8CVK|1|2A|G|625
8CVK|1|2A|U|626
8CVK|1|2A|A|627
8CVK|1|2A|G|628
*
8CVK|1|2A|C|635
8CVK|1|2A|G|636
8CVK|1|2A|A|637
8CVK|1|2A|G|638
*
8CVK|1|2A|C|650
8CVK|1|2A|G|651
8CVK|1|2A|C|652
8CVK|1|2A|A|652|||A
8CVK|1|2A|A|652|||B
8CVK|1|2A|G|652|||C
*
8CVK|1|2A|C|652|||V
8CVK|1|2A|A|653
8CVK|1|2A|A|654
8CVK|1|2A|A|655
8CVK|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15