3D structure

PDB id
8CVL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.3 Å

Loop

Sequence
CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
Length
33 nucleotides
Bulged bases
8CVL|1|1A|U|272|||A, 8CVL|1|1A|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8CVL|1|1A|C|268
8CVL|1|1A|U|269
8CVL|1|1A|A|270
8CVL|1|1A|A|271
8CVL|1|1A|A|271|||A
8CVL|1|1A|C|271|||B
*
8CVL|1|1A|G|271|||V
8CVL|1|1A|G|271|||W
8CVL|1|1A|G|271|||X
8CVL|1|1A|U|271|||Y
8CVL|1|1A|C|271|||Z
8CVL|1|1A|G|272
8CVL|1|1A|U|272|||A
8CVL|1|1A|G|272|||B
*
8CVL|1|1A|C|366
8CVL|1|1A|G|370
8CVL|1|1A|A|371
8CVL|1|1A|G|372
8CVL|1|1A|U|373
8CVL|1|1A|A|374
8CVL|1|1A|C|375
*
8CVL|1|1A|G|399
8CVL|1|1A|G|400
8CVL|1|1A|A|401
8CVL|1|1A|A|402
8CVL|1|1A|U|403
8CVL|1|1A|C|404
8CVL|1|1A|U|405
8CVL|1|1A|G|406
*
8CVL|1|1A|U|421
8CVL|1|1A|A|422
8CVL|1|1A|A|423
8CVL|1|1A|G|424

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 11
50S ribosomal protein L28
Chain 1I
50S ribosomal protein L9

Coloring options:

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