J5_8CVL_014

3D structure

PDB id

8CVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

8CVL|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVL|1|2A|C|601
8CVL|1|2A|G|602
8CVL|1|2A|A|603
8CVL|1|2A|G|604
*
8CVL|1|2A|C|624
8CVL|1|2A|G|625
8CVL|1|2A|U|626
8CVL|1|2A|A|627
8CVL|1|2A|G|628
*
8CVL|1|2A|C|635
8CVL|1|2A|G|636
8CVL|1|2A|A|637
8CVL|1|2A|G|638
*
8CVL|1|2A|C|650
8CVL|1|2A|G|651
8CVL|1|2A|C|652
8CVL|1|2A|A|652|||A
8CVL|1|2A|A|652|||B
8CVL|1|2A|G|652|||C
*
8CVL|1|2A|C|652|||V
8CVL|1|2A|A|653
8CVL|1|2A|A|654
8CVL|1|2A|A|655
8CVL|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15