J5_8E3M_005
3D structure
- PDB id
- 8E3M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to L-linker solithromycin conjugate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.25 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 8E3M|1|I|A|2448, 8E3M|1|I|U|2449, 8E3M|1|I|U|2609
- QA status
- Modified nucleotides: 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8E3M|1|I|G|2057
8E3M|1|I|A|2058
8E3M|1|I|A|2059
8E3M|1|I|A|2060
8E3M|1|I|G|2061
8E3M|1|I|A|2062
8E3M|1|I|C|2063
8E3M|1|I|C|2064
*
8E3M|1|I|G|2446
8E3M|1|I|G|2447
8E3M|1|I|A|2448
8E3M|1|I|U|2449
8E3M|1|I|A|2450
8E3M|1|I|A|2451
8E3M|1|I|C|2452
8E3M|1|I|A|2453
*
8E3M|1|I|U|2500
8E3M|1|I|C|2501
8E3M|1|I|G|2502
8E3M|1|I|2MA|2503
8E3M|1|I|PSU|2504
8E3M|1|I|G|2505
8E3M|1|I|U|2506
8E3M|1|I|C|2507
*
8E3M|1|I|G|2582
8E3M|1|I|G|2583
8E3M|1|I|U|2584
8E3M|1|I|U|2585
8E3M|1|I|U|2586
8E3M|1|I|A|2587
8E3M|1|I|G|2588
*
8E3M|1|I|C|2606
8E3M|1|I|G|2607
8E3M|1|I|G|2608
8E3M|1|I|U|2609
8E3M|1|I|C|2610
8E3M|1|I|C|2611
Current chains
- Chain I
- 50S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L4
- Chain N
- 50S ribosomal protein L3
- Chain P
- 50S ribosomal protein L22
- Chain Q
- 50S ribosomal protein L32
Coloring options: