J5_8E41_001

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8E41|1|I|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8E41_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0437

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8E41|1|I|C|47
8E41|1|I|G|48
8E41|1|I|A|49
8E41|1|I|U|50
8E41|1|I|G|51
8E41|1|I|A|52
8E41|1|I|A|53
8E41|1|I|G|54
*
8E41|1|I|C|116
8E41|1|I|G|117
8E41|1|I|A|118
8E41|1|I|A|119
8E41|1|I|U|120
8E41|1|I|G|121
*
8E41|1|I|C|130
8E41|1|I|A|131
*
8E41|1|I|U|148
8E41|1|I|A|149
8E41|1|I|U|150
*
8E41|1|I|A|176
8E41|1|I|G|177
8E41|1|I|G|178

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L34