J5_8E42_005

3D structure

PDB id

8E42 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and azithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

8E42|1|I|A|2062, 8E42|1|I|A|2448, 8E42|1|I|U|2449, 8E42|1|I|U|2609

QA status

Modified nucleotides: 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E42|1|I|G|2057
8E42|1|I|A|2058
8E42|1|I|A|2059
8E42|1|I|A|2060
8E42|1|I|G|2061
8E42|1|I|A|2062
8E42|1|I|C|2063
8E42|1|I|C|2064
*
8E42|1|I|G|2446
8E42|1|I|G|2447
8E42|1|I|A|2448
8E42|1|I|U|2449
8E42|1|I|A|2450
8E42|1|I|A|2451
8E42|1|I|C|2452
8E42|1|I|A|2453
*
8E42|1|I|U|2500
8E42|1|I|C|2501
8E42|1|I|G|2502
8E42|1|I|2MA|2503
8E42|1|I|PSU|2504
8E42|1|I|G|2505
8E42|1|I|U|2506
8E42|1|I|C|2507
*
8E42|1|I|G|2582
8E42|1|I|G|2583
8E42|1|I|U|2584
8E42|1|I|U|2585
8E42|1|I|U|2586
8E42|1|I|A|2587
8E42|1|I|G|2588
*
8E42|1|I|C|2606
8E42|1|I|G|2607
8E42|1|I|G|2608
8E42|1|I|U|2609
8E42|1|I|C|2610
8E42|1|I|C|2611

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4

Chain N

50S ribosomal protein L3

Chain P

50S ribosomal protein L22

Chain Q

50S ribosomal protein L32