J5_8E43_005

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

8E43|1|I|A|2062, 8E43|1|I|A|2448, 8E43|1|I|U|2449, 8E43|1|I|U|2609

QA status

Modified nucleotides: 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E43|1|I|G|2057
8E43|1|I|A|2058
8E43|1|I|A|2059
8E43|1|I|A|2060
8E43|1|I|G|2061
8E43|1|I|A|2062
8E43|1|I|C|2063
8E43|1|I|C|2064
*
8E43|1|I|G|2446
8E43|1|I|G|2447
8E43|1|I|A|2448
8E43|1|I|U|2449
8E43|1|I|A|2450
8E43|1|I|A|2451
8E43|1|I|C|2452
8E43|1|I|A|2453
*
8E43|1|I|U|2500
8E43|1|I|C|2501
8E43|1|I|G|2502
8E43|1|I|2MA|2503
8E43|1|I|PSU|2504
8E43|1|I|G|2505||A
8E43|1|I|U|2506||A
8E43|1|I|C|2507||A
*
8E43|1|I|G|2582
8E43|1|I|G|2583
8E43|1|I|U|2584
8E43|1|I|U|2585
8E43|1|I|U|2586
8E43|1|I|A|2587
8E43|1|I|G|2588
*
8E43|1|I|C|2606
8E43|1|I|G|2607
8E43|1|I|G|2608
8E43|1|I|U|2609
8E43|1|I|C|2610
8E43|1|I|C|2611

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4

Chain N

50S ribosomal protein L3

Chain P

50S ribosomal protein L22

Chain Q

50S ribosomal protein L32