J5_8E44_005

3D structure

PDB id

8E44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC09

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

8E44|1|I|A|2062||A, 8E44|1|I|A|2448, 8E44|1|I|U|2449, 8E44|1|I|U|2585||A, 8E44|1|I|U|2609

QA status

Modified nucleotides: 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E44|1|I|G|2057
8E44|1|I|A|2058
8E44|1|I|A|2059
8E44|1|I|A|2060
8E44|1|I|G|2061||A
8E44|1|I|A|2062||A
8E44|1|I|C|2063||A
8E44|1|I|C|2064
*
8E44|1|I|G|2446
8E44|1|I|G|2447
8E44|1|I|A|2448
8E44|1|I|U|2449
8E44|1|I|A|2450
8E44|1|I|A|2451
8E44|1|I|C|2452
8E44|1|I|A|2453
*
8E44|1|I|U|2500
8E44|1|I|C|2501
8E44|1|I|G|2502
8E44|1|I|2MA|2503
8E44|1|I|PSU|2504
8E44|1|I|G|2505
8E44|1|I|U|2506
*
8E44|1|I|G|2583
8E44|1|I|U|2584||A
8E44|1|I|U|2585||A
8E44|1|I|U|2586||A
8E44|1|I|A|2587
8E44|1|I|G|2588
*
8E44|1|I|C|2606
8E44|1|I|G|2607
8E44|1|I|G|2608
8E44|1|I|U|2609
8E44|1|I|C|2610
8E44|1|I|C|2611

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4

Chain N

50S ribosomal protein L3

Chain P

50S ribosomal protein L22

Chain Q

50S ribosomal protein L32