J5_8E46_001

3D structure

PDB id

8E46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8E46|1|I|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8E46_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0781

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8E46|1|I|C|47
8E46|1|I|G|48
8E46|1|I|A|49
8E46|1|I|U|50
8E46|1|I|G|51
8E46|1|I|A|52
8E46|1|I|A|53
8E46|1|I|G|54
*
8E46|1|I|C|116
8E46|1|I|G|117
8E46|1|I|A|118
8E46|1|I|A|119
8E46|1|I|U|120
8E46|1|I|G|121
*
8E46|1|I|C|130
8E46|1|I|A|131
*
8E46|1|I|U|148
8E46|1|I|A|149
8E46|1|I|U|150
*
8E46|1|I|A|176
8E46|1|I|G|177
8E46|1|I|G|178

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L34