J5_8E46_005

3D structure

PDB id

8E46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

8E46|1|I|A|2062, 8E46|1|I|A|2448, 8E46|1|I|U|2449, 8E46|1|I|U|2585, 8E46|1|I|U|2609

QA status

Modified nucleotides: 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E46|1|I|G|2057
8E46|1|I|A|2058
8E46|1|I|A|2059
8E46|1|I|A|2060
8E46|1|I|G|2061
8E46|1|I|A|2062
8E46|1|I|C|2063
8E46|1|I|C|2064
*
8E46|1|I|G|2446
8E46|1|I|G|2447
8E46|1|I|A|2448
8E46|1|I|U|2449
8E46|1|I|A|2450
8E46|1|I|A|2451
8E46|1|I|C|2452
8E46|1|I|A|2453
*
8E46|1|I|U|2500
8E46|1|I|C|2501
8E46|1|I|G|2502
8E46|1|I|2MA|2503
8E46|1|I|PSU|2504
8E46|1|I|G|2505
8E46|1|I|U|2506
8E46|1|I|C|2507
*
8E46|1|I|G|2582
8E46|1|I|G|2583
8E46|1|I|U|2584
8E46|1|I|U|2585
8E46|1|I|U|2586
8E46|1|I|A|2587
8E46|1|I|G|2588
*
8E46|1|I|C|2606
8E46|1|I|G|2607
8E46|1|I|G|2608
8E46|1|I|U|2609
8E46|1|I|C|2610
8E46|1|I|C|2611

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4

Chain N

50S ribosomal protein L3

Chain P

50S ribosomal protein L22

Chain Q

50S ribosomal protein L32