J5_8E48_005

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8E48|1|I|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8E48_005 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1068

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8E48|1|I|C|47
8E48|1|I|G|48
8E48|1|I|A|49
8E48|1|I|U|50
8E48|1|I|G|51
8E48|1|I|A|52
8E48|1|I|A|53
8E48|1|I|G|54
*
8E48|1|I|C|116
8E48|1|I|G|117
8E48|1|I|A|118
8E48|1|I|A|119
8E48|1|I|U|120
8E48|1|I|G|121
*
8E48|1|I|C|130
8E48|1|I|A|131
*
8E48|1|I|U|148
8E48|1|I|A|149
8E48|1|I|U|150
*
8E48|1|I|A|176
8E48|1|I|G|177
8E48|1|I|G|178

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L34