J5_8EIU_004

3D structure

PDB id

8EIU (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A-loop mutations U2554C and U2555C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8EIU|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8EIU_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0457

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8EIU|1|a|C|47
8EIU|1|a|G|48
8EIU|1|a|A|49
8EIU|1|a|U|50
8EIU|1|a|G|51
8EIU|1|a|A|52
8EIU|1|a|A|53
8EIU|1|a|G|54
*
8EIU|1|a|C|116
8EIU|1|a|G|117
8EIU|1|a|A|118
8EIU|1|a|A|119
8EIU|1|a|U|120
8EIU|1|a|G|121
*
8EIU|1|a|C|130
8EIU|1|a|A|131
*
8EIU|1|a|U|148
8EIU|1|a|A|149
8EIU|1|a|U|150
*
8EIU|1|a|A|176
8EIU|1|a|G|177
8EIU|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34